rs246446244 SNP Detail

Summary

• ID
  rs246446244
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:87703790 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATTTCTGAG TTCGAGGCCA
  GCCTGGTCTA CTTCCAGGAC AGCCAGGGCT ACACAAAGGA ACCCTGTCTC GAAAAACCAA
  AAAAAAAAAA AGTAACCAAA TGAAGGAGGA ATCTCACAGA GAGAAGAACG ACTCGTCTCC
  TAGGGATTTG AGCCAAAACC AAGGGATTTG ACGGGGACAT ACCCCGCGCC AAGGAAGTAT
  R
  TTCAAAGTAG CCTCGGGAGG CTGGGAAGGG CTGTGAGAGG CGAAGTGGTG AGGTCGAAGT
  GGTGAGGTCT TCAGGTTTCA CCAGTGGAGT CCGACCTGTC CAGGCTGCGG GAAGTTACCC
  CGCAGATGTC AAAACACCTG TTGGACTCCA GAACTCCCCT GCAAATCAAG CCAGGGAGCC
  CAGCCGCTCC CTCCAGATCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss358784084	MGP_WTSI_3_87600405	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs246446244					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358784084	MGP_WTSI_3_87600405	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:87703790 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13339	CpG island 13339	353 bp distal
Cpgi13340	CpG island 13340	328 bp proximal
Insrr	insulin receptor-related receptor	468 bp upstream
Ntrk1	neurotrophic tyrosine kinase, receptor, type 1	1321 bp upstream
Rr579548	regulatory region 579548	831 bp distal
Rr579549	regulatory region 579549	1214 bp distal
Rr579550	regulatory region 579550	721 bp distal
Rr579551	regulatory region 579551	within coordinates
Tssr29830	transcription start site region 29830	406 bp upstream
Tssr29831	transcription start site region 29831	455 bp upstream
Tssr33956	transcription start site region 33956	1261 bp upstream