rs246405184 SNP Detail

Summary

• ID
  rs246405184
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:110145477 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TTTCAAAAG CATTCAAGTT TGGGATTAAG
  CTTGTTGAGT GAATTGGGTT CACAACTTTG CCTTAAAAAC TATTTCCTAA GAGTTTaaga
  aagaaagaaa gaaagaaaga aagaaagaaa gaaagaaaga aaggaaggaa gaaaggaagg
  R
  aagaaaAGCT GGGGGAAGGA GGAGGGCCAC TGTCAGCTTC TACCTTTCTG TCTTCTATGT
  GAGCTTTCTA CGACAGAGAA GGGTGAATGA TTTATTTAAA TGAATTTATT TTCCAACTTA
  GGGGCATGCT CTGCATTTAA AAAAAATATA                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321255938	CHEV_4_109960885	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs246405184					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:110145477 () rs orientation: forward

Symbol	Name	Function Class
Elavl4	ELAV like RNA binding protein 4	Intron
Rr597418	regulatory region 597418	1402 bp distal
Rr597419	regulatory region 597419	901 bp distal
Rr597420	regulatory region 597420	263 bp distal
Rr597421	regulatory region 597421	1982 bp proximal
Tssr42786	transcription start site region 42786	1750 bp upstream
Tssr42787	transcription start site region 42787	1663 bp upstream
Tssr42788	transcription start site region 42788	1639 bp upstream
Tssr42789	transcription start site region 42789	1394 bp upstream
Tssr42790	transcription start site region 42790	746 bp upstream