rs246395255 SNP Detail

Summary

• ID
  rs246395255
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:151951688 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGACGCCCTC TTCTGGAGTG
  TCTGAAGACT ACTACAGTGT ACTTACATAT AATAAATAAA TCTTTTTTAT GTTAAAGTGC
  TTTAAATTGA TTCTTCGGAT AACTATTTTA CAAACATTAA CATAATGTGG AAAGTTTTAA
  CTTTTTGACA AATTAGATAT CAATATGCAA GAAAGTATGT TAGGGGGCTG GAGAGATGGC
  T
  CAGTGGATAA AAGCACTGAC TGTTCTTCCA AAGGTCATGA GTTCAATTTC CAGCAACCAC
  ATGGTGGCTC ACAACCATCT GTAAAGAGAT CTGATGCCCT CTTCTGGTGT GTCTGAAAAC
  AGCTACAATG CACTCATATA AATAAAATAA ATCTTTAAAA AAAAAAGTTG GGTATTTTGA
  AGTTAGATAA TTGTGAATTG                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321028496	CHEV_3_151909015	CHEVERUD	SCREENING_POP	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs246395255					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151951688 () rs orientation: forward

Symbol	Name	Function Class
Nexn	nexilin	Intron
Rr587498	regulatory region 587498	402 bp distal
Rr587499	regulatory region 587499	346 bp distal
Rr587500	regulatory region 587500	180 bp distal
Rr587501	regulatory region 587501	91 bp proximal
Rr587502	regulatory region 587502	390 bp proximal
Tssr36178	transcription start site region 36178	1973 bp upstream
Tssr36179	transcription start site region 36179	1057 bp downstream
Tssr36180	transcription start site region 36180	1135 bp downstream
Tssr36181	transcription start site region 36181	1159 bp downstream
Tssr36182	transcription start site region 36182	1174 bp downstream
Tssr36183	transcription start site region 36183	1202 bp downstream
Tssr36184	transcription start site region 36184	1905 bp downstream
Tssr36185	transcription start site region 36185	1921 bp downstream