rs246385314 SNP Detail

Summary

• ID
  rs246385314
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:117149261 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGTATAAAT GATGTGAATA
  TCTCACTCAG AGTCTGGTAG ACTTGGCAGA GATGTGTCCT GTGCTAGTCT GTCCTGCTCA
  CTGCCCCCCA GCAGGGGTTC CCATCCTCGG GAGACTCAAC ACTAACAACA GTATAAGGAT
  GCAGCAGCTG GAGCAATGCT AGCCTGACGG CTTTGTCACC CAACGGTGAC TGCTTCAGAC
  K
  TTCTGTGCTC ATCAGCCTTC CTCTCCAGCC TCCGCTGCTG TGTTATGTAC AGTAGGCTTT
  AGAGACCTAG ATGATGAATA TTATTTTTGC TGTTTTGATT AAAATACAAT ACTCTCCCGA
  GAAAGGGATT TTAAAGATGA TGAGTTTACG TTTGAATAGG CTGTGCTGGT GCACTGTCCC
  GGGAAGGGCC CTTGAACTTA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369791547	MGP_WTSI_6_117122318	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs246385314					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369791547	MGP_WTSI_6_117122318	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:117149261 () rs orientation: forward

Symbol	Name	Function Class
Cxcl12	C-X-C motif chemokine ligand 12	Intron
Rr637287	regulatory region 637287	1677 bp distal
Rr637288	regulatory region 637288	131 bp proximal
Rr637289	regulatory region 637289	1566 bp proximal
Rr637290	regulatory region 637290	1751 bp proximal
Rr637291	regulatory region 637291	1802 bp proximal
Tssr58392	transcription start site region 58392	813 bp downstream
Tssr58393	transcription start site region 58393	794 bp downstream
Tssr58394	transcription start site region 58394	754 bp downstream
Tssr58395	transcription start site region 58395	1192 bp upstream
Tssr58396	transcription start site region 58396	1208 bp upstream
Tssr58397	transcription start site region 58397	1246 bp upstream
Tssr58398	transcription start site region 58398	1272 bp upstream
Tssr58399	transcription start site region 58399	1294 bp upstream
Tssr58400	transcription start site region 58400	1322 bp upstream
Tssr58401	transcription start site region 58401	1358 bp upstream
Tssr58402	transcription start site region 58402	1389 bp upstream
Tssr58403	transcription start site region 58403	1407 bp upstream
Tssr58404	transcription start site region 58404	1426 bp upstream
Tssr58405	transcription start site region 58405	1468 bp upstream
Tssr58406	transcription start site region 58406	1498 bp upstream
Tssr58407	transcription start site region 58407	1529 bp upstream
Tssr58408	transcription start site region 58408	1596 bp upstream
Tssr58409	transcription start site region 58409	1618 bp upstream
Tssr58410	transcription start site region 58410	1640 bp upstream
Tssr58411	transcription start site region 58411	1656 bp upstream
Tssr58412	transcription start site region 58412	1683 bp upstream
Tssr58413	transcription start site region 58413	1696 bp upstream
Tssr58414	transcription start site region 58414	1729 bp upstream
Tssr58415	transcription start site region 58415	1744 bp upstream
Tssr58416	transcription start site region 58416	1759 bp upstream
Tssr58417	transcription start site region 58417	1813 bp upstream
Tssr58418	transcription start site region 58418	1846 bp upstream
Tssr58419	transcription start site region 58419	1865 bp upstream
Tssr58420	transcription start site region 58420	1892 bp upstream
Tssr58421	transcription start site region 58421	1911 bp upstream
Tssr58422	transcription start site region 58422	1937 bp upstream
Tssr58423	transcription start site region 58423	1945 bp upstream
Tssr62617	transcription start site region 62617	1256 bp downstream
Tssr62618	transcription start site region 62618	1278 bp downstream
Tssr62619	transcription start site region 62619	1314 bp downstream
Tssr62620	transcription start site region 62620	1357 bp downstream
Tssr62621	transcription start site region 62621	1423 bp downstream
Tssr62622	transcription start site region 62622	1975 bp downstream
Tssr62623	transcription start site region 62623	1993 bp downstream