rs246380547 SNP Detail

Summary

• ID
  rs246380547
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:67510935 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CTCCCACTC CTGTTCAGAT CTGAAGGCGG
  TTAGTTTTAG CAACTTCCTT CAAAGGAACA GCAACCTCAA AGTTTACATT TTTCCCTCTA
  CCCACTGCTG AGGATGGGAC CGAGGGCCGG GTCAGATGCG AGGCAAGCAC ACTAGCCCAG
  Y
  CTCTAGGAAA CACCAGAGTA TCAACAGTAA ATGTTAGGAT TTCACAAGGA AGGAAGCATT
  AGAATTTAAA ATATAAAATT CAAGCATTAG ACAAAGGAGA ACAATAAAAT GATATAAATC
  TGGAGGGATT TTTCACACAG CCTATCTTTT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321812324	CHEV_6_67483945	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs246380547					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:67510935 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17511	CpG island 17511	543 bp distal
Cpgi17512	CpG island 17512	699 bp proximal
Gm42889	predicted gene 42889	within coordinates
Gm67034	predicted gene, 67034	645 bp upstream
Rr368087	regulatory region 368087	578 bp downstream
Rr631664	regulatory region 631664	1884 bp distal
Rr631666	regulatory region 631666	656 bp distal
Rr631667	regulatory region 631667	155 bp distal
Rr631668	regulatory region 631668	840 bp proximal
Rr631669	regulatory region 631669	1283 bp proximal
Rr631670	regulatory region 631670	1834 bp proximal
Rr631671	regulatory region 631671	1835 bp proximal
Tacstd2	tumor-associated calcium signal transducer 2	111 bp downstream
Tssr1867	transcription start site region 1867	1410 bp upstream
Tssr1868	transcription start site region 1868	1374 bp upstream
Tssr1869	transcription start site region 1869	613 bp upstream
Tssr1870	transcription start site region 1870	482 bp downstream
Tssr1871	transcription start site region 1871	133 bp downstream
Tssr1872	transcription start site region 1872	821 bp downstream
Tssr61254	transcription start site region 61254	288 bp upstream
Tssr61255	transcription start site region 61255	779 bp downstream
Tssr61256	transcription start site region 61256	1243 bp downstream
Tssr61257	transcription start site region 61257	1734 bp downstream
Tssr61258	transcription start site region 61258	1832 bp downstream
Tssr61259	transcription start site region 61259	1877 bp downstream