rs246379678 SNP Detail

Summary

• ID
  rs246379678
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:22495217 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGAATTTT AGGTCAGGCA
  CTTGGGCCCC CTTTTTTCTT TTCTTTTTAG TGATCTCCTG TTGAGGTCAA CTATGGCTCT
  TTTCCTGGTC AAAATTTAAT TAGGTAGGGA TACACACCAC ACACACATGT GTATTCATGT
  GTGTATAAAA TCATATATAT ATATATATAT ATATATATAT ATATATATAT ATATATTTAG
  M
  TTTCTCTCTT TCTTAATAGC AGTGGCTGTG TATGGAGAGT TTTGTGAGTT AGTAAAACAA
  CCCCCTAGAG AGAAAAATTT AACCCCAACT TTTAAAAAAT TCAACTTAAA CTCTTACAGT
  GTTTATAGTT TATAAAATTA AACATATGAA AGTTGGCCAA AGTTTAGAAA TCTGATAAAT
  TACACACACA CACACACACA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	LEWES/EiJ	LP/J	MA/MyJ	NZB/BlNJ	PL/J	QSi5/Ianm	SEA/GnJ	SPRET/EiJ	ST/bJ	WSB/EiJ	ZALENDE/EiJ
ss367654300	MGP_WTSI_6_22445218	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	LEWES/EiJ	LP/J	MA/MyJ	NZB/BlNJ	PL/J	QSi5/Ianm	SEA/GnJ	SPRET/EiJ	ST/bJ	WSB/EiJ	ZALENDE/EiJ
rs246379678					SNP	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss367654300	MGP_WTSI_6_22445218	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:22495217 () rs orientation: forward

Symbol	Name	Function Class
Rr379050	regulatory region 379050	259 bp downstream
Rr627113	regulatory region 627113	953 bp distal
Rr627114	regulatory region 627114	1088 bp distal
Rr627115	regulatory region 627115	1441 bp proximal