rs246318745 SNP Detail

Summary

• ID
  rs246318745
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:163381435 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAGACCAGG TTCTGGGGCT
  TTGGAACAAG GGCGGGATTT CCACCCCCTG CACCATCCCC CACCTCAGCC TCCTGAACTA
  GAATATTTGT GCAGTGAGTG ACCTGTGCAA CTAAACACAG TGATCCTGGC CTGTCTCCGA
  ACGAACTCCC AAATACTTTA CCCTGATGAC ATCAGACAAA TCCCTGGGGC CCCTCCGAAC
  W
  GGAGTCGAGG AGATTAAGGA TAACTTCTGA ATAGCAGACT CATTCCTCAT TCCCAAGACC
  AGGACTTGGG GTAACAGGGG CTTCCCATCA CCCCTCAGGC CCCACACAGG CCAAGGTCAC
  CCTCACAGAA CACAAACAGG ACAGTGGCAG TGTCAGCTCG GATGTCATAA GCCACCTGGC
  CGTAGGCAAA CAGAACTCAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320603596	CHEV_2_163365251	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs246318745					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:163381435 () rs orientation: forward

Symbol	Name	Function Class
Hnf4a	hepatic nuclear factor 4, alpha	Intron
Hnf4aos	hepatic nuclear factor 4 alpha, opposite strand	within coordinates
Rr569404	regulatory region 569404	within coordinates
Rr569405	regulatory region 569405	713 bp proximal
Rr569406	regulatory region 569406	1277 bp proximal