rs246303772 SNP Detail

Summary

• ID
  rs246303772
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:54496787 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGGAGTTGA ATCCCCTAAC
  CTGGAGCACA GGAGGTTGTG GGCACCAGGT CTTCTGCAAA AGCAGGCAGT CCTCTTAACC
  ACTGAGCCAT CTCTCCAGCC CCTACTTCTA TTATTTTTCC TGCACTGGGG ATGGAATACC
  TGGCCTCAAT CGTGCTAGAT AAGTGTTCTA CCCATCCCCT ACTTATTTCC TACTTTCTGA
  Y
  TATTTGTTTA CTTATTTATT ATTTTTACTC TTTGATTAAG GCTTCACCAG GTTAACCAGG
  ACGGCTCTGA ACTCCCTCTG CATCTCAGAC AGACCTTGAG ACTTGTGACC CAGGAGAACA
  AATGTTTTTC ACAAAAGGTC TATATAGCTG TCTTCTGAGA ATCTCTGACA GTGCCTGACA
  AATACAGAGG TGGATCCTCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320772052	CHEV_3_54393288	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs246303772					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:54496787 () rs orientation: forward

Symbol	Name	Function Class
Gm40050	predicted gene, 40050	within coordinates
Gm65163	predicted gene, 65163	1036 bp downstream
Rr367440	regulatory region 367440	703 bp upstream
Rr576811	regulatory region 576811	1434 bp distal
Rr576812	regulatory region 576812	639 bp distal
Rr576813	regulatory region 576813	610 bp proximal
Rr576814	regulatory region 576814	1978 bp proximal