rs246275249 SNP Detail

Summary

• ID
  rs246275249
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:135898959 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CTGTCAAGG GCGGGGCAGA GTTTGGGAGA
  GTGGAAAGGA GCTCTTTACT AGAACAAAGA CTCCCGACCT GGACTGTCCT ACATTTGACT
  GCCAATTCTC AGATCAGCGA ATCTGTGAAT GACCCGAGGC ACAATATCCC GCCCCTCCGA
  Y
  TCCCTGGTCT TACCCATccc acttctccgg attgatggga taaattaaac aacataacat
  atataatggt ctaatcttag tgtactgtac gggcgtacag taggcgctca atagaggtta
  gtttttttCC TGAAGAAAAA CATAAAAGGG                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321354360	CHEV_4_135727563	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs246275249					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135898959 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15100	CpG island 15100	305 bp proximal
E2f2	E2F transcription factor 2	746 bp upstream
Rr367754	regulatory region 367754	420 bp upstream
Rr602302	regulatory region 602302	256 bp proximal
Tssr39670	transcription start site region 39670	618 bp upstream
Tssr39671	transcription start site region 39671	719 bp upstream
Tssr39672	transcription start site region 39672	748 bp upstream
Tssr39673	transcription start site region 39673	780 bp upstream
Tssr39674	transcription start site region 39674	910 bp upstream
Tssr39675	transcription start site region 39675	1018 bp upstream
Tssr39676	transcription start site region 39676	1202 bp upstream
Tssr39677	transcription start site region 39677	1297 bp upstream
Tssr39678	transcription start site region 39678	1519 bp upstream
Tssr44029	transcription start site region 44029	670 bp downstream
Tssr44030	transcription start site region 44030	953 bp downstream
Tssr44031	transcription start site region 44031	1390 bp downstream