rs246219666 SNP Detail

Summary

• ID
  rs246219666
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:30910000 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCGGTCAACT CGGTCGCCTC
  TTGTCGCCCA ACCCGCAGGG GGCGTCCTAC GCACTGTCAA CTCGGAAGTG CCCGCATGCA
  AGCTGTTTTT TCCAGTATGA GCTAGATGGA AGACCACAGT GTGGAGTCAC GCACCTTACC
  CTGAGCAGTC TGGGCCTGAC TACTGAAAGA AAAGAAGAGC ATCCGGATTA CTCCCGCAGT
  R
  ACCAAAGACA GGAGGCGGGG CGGGGCGAGC GGAGGTGAGC CTCGCGTGGC CCCGCCCCTC
  GAGGGGACTC ACCTGGGGCG GGCGGGGCGT GGGTGGGCGG GGCGAGCGGA GGTGAGCGAC
  GCGCGGACCT GCCGCTCAGG CAGTTACGGA GGTTGGTGGC TTTTGGCTAC TCACGCTACG
  CCAGGGACTG AGGAGTGCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss357427631	MGP_WTSI_3_30754773	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs246219666					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357427631	MGP_WTSI_3_30754773	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:30910000 () rs orientation: forward

Symbol	Name	Function Class
Gm42199	predicted gene, 42199	within coordinates
Gpr160	G protein-coupled receptor 160	mRNA-UTR
Rr574830	regulatory region 574830	1040 bp distal
Rr574831	regulatory region 574831	within coordinates
Rr574832	regulatory region 574832	60 bp proximal
Rr574833	regulatory region 574833	175 bp proximal
Rr574834	regulatory region 574834	507 bp proximal
Tssr28695	transcription start site region 28695	93 bp downstream
Tssr28696	transcription start site region 28696	95 bp upstream
Tssr28697	transcription start site region 28697	153 bp upstream
Tssr28698	transcription start site region 28698	163 bp upstream