rs246208486 SNP Detail

Summary

• ID
  rs246208486
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:138669372 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCATAGGGT ACAAGGCTGA
  CGGAGGAATG AGGATTAAAG CAAGCAGATT TTTGGAGACT CCTGAAACCA TACATACAGT
  GGCTTCAGAT TCCTGGCCAC GGTATTTTAT TTTATAGGTA GAAAAGCAGG CTAAAACACT
  GCCCTGTGAC ACCCAAGCAA GGCCTCCTGG ACCCATGCAG GGATCAAGTT TCTCCGTCCC
  C
  CCCCCCACCT CCCCAGGCTT CAGCAAACAA GACAACACCT GCCTTCTCTT TGCTGCCAAA
  ATGCAGTGTG AGACTCTTAT GAACTATTAA ACGGAATCCA CCCATACAGA TCAAATTCAA
  GGCAACAGGA TGGAGACATT CTGCGGCTCA AAGTTAGTGT TTATGTAGTG GGTGTGTGCC
  GAGCTCCCTC ACCATCAGAC                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321378262	CHEV_4_138497976	CHEVERUD	SCREENING_POP	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs246208486					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:138669372 () rs orientation: forward

Symbol	Name	Function Class
Rr398631	regulatory region 398631	1687 bp upstream
Rr603051	regulatory region 603051	241 bp distal
Rr603052	regulatory region 603052	within coordinates
Rr603053	regulatory region 603053	1516 bp proximal
Rr603054	regulatory region 603054	1847 bp proximal