rs246176465 SNP Detail

Summary

• ID
  rs246176465
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:101503971 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAGAATAAG ATGGATCTGG
  AGGAGTGAAA ATTGGCCTTA GTTACTTGCA GGCCTGCGTT TATTTAAGGA CCTAAAGAAA
  TCCGGACCCA CAGAGTTTGT AATGAATGAG GGGGATAGAC GGACGCGGTA GTTTACACAA
  AATGTTAATG TAGTTTGCTA CAAAGCAAGC AAATCTATAC AAAAGTCAAA GATCTTACAT
  R
  GGGATATCTC TAATCCTGAT TTCTGGTGCT GTCACTCACT CCCGATCTCT ACTATATCAG
  CCACACACTC TCAAAACAAA CCACACAGGC ACACAGGAAG AGTCGTCCTG GAAGGTAACC
  TCTCCCCATC CTTATCCCGT GCCCCACTTT TTCCACCAGT CCTTTCAGGC AAGTTTCCTA
  ACAGCCAGCC AGGGTGATGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss362620028	MGP_WTSI_4_101319379	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs246176465					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss362620028	MGP_WTSI_4_101319379	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:101503971 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14504	CpG island 14504	344 bp proximal
Leprot	leptin receptor overlapping transcript	951 bp upstream
Rr367655	regulatory region 367655	538 bp upstream
Rr398357	regulatory region 398357	777 bp upstream
Rr596187	regulatory region 596187	454 bp proximal
Rr596188	regulatory region 596188	554 bp proximal
Rr596189	regulatory region 596189	923 bp proximal
Rr596190	regulatory region 596190	1030 bp proximal
Tssr38009	transcription start site region 38009	902 bp upstream
Tssr38010	transcription start site region 38010	938 bp upstream
Tssr38011	transcription start site region 38011	968 bp upstream
Tssr38012	transcription start site region 38012	989 bp upstream