rs246132776 SNP Detail

Summary

• ID
  rs246132776
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:151951089 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTTTTTCT GTGTCCTGGA
  GATAAAAACA CTTTGTTGAG ATCTGAACTG TGGCCTGCAG ACATGGGCTC ACAGGCAAAA
  AAGCAAGCAA GTTAGGACTT GGTCCCAGCC AAGGAATAGC AACAGTGATA TGGATTACAG
  TAGTGAAGTG AGAGTAAATC AGGGAGCCAG TTGGGCTGAG TGAAAAGCTG AAGGCATGTG
  Y
  TTCAGGGTTC TGAGTTTCTG ATTTGAGTGA TTAAACAACG TACTTGGTAG AATGCCCAGA
  ACAGGCAGGA ACAAATGCTA GGCTATTTTA TCAGAAGGCA ATTAAAATGC AAAAAGGGGA
  TGCAGGGCTG GAGAGATGGC TCAGTGGTTA AGAGCACTGA CTGCTCTTCC AGAGGTCCTG
  AGTTCAATTC CCAGCAACCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss360262389	MGP_WTSI_3_151908416	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs246132776					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss360262389	MGP_WTSI_3_151908416	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151951089 () rs orientation: forward

Symbol	Name	Function Class
Nexn	nexilin	Intron
Rr587498	regulatory region 587498	within coordinates
Rr587499	regulatory region 587499	232 bp proximal
Rr587500	regulatory region 587500	398 bp proximal
Rr587501	regulatory region 587501	690 bp proximal
Rr587502	regulatory region 587502	989 bp proximal
Tssr36173	transcription start site region 36173	1591 bp upstream
Tssr36174	transcription start site region 36174	1554 bp upstream
Tssr36175	transcription start site region 36175	1465 bp upstream
Tssr36176	transcription start site region 36176	1448 bp upstream
Tssr36177	transcription start site region 36177	1419 bp upstream
Tssr36178	transcription start site region 36178	1374 bp upstream
Tssr36179	transcription start site region 36179	1656 bp downstream
Tssr36180	transcription start site region 36180	1734 bp downstream
Tssr36181	transcription start site region 36181	1758 bp downstream
Tssr36182	transcription start site region 36182	1773 bp downstream
Tssr36183	transcription start site region 36183	1801 bp downstream