rs246089977 SNP Detail

Summary

• ID
  rs246089977
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:156577105 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    cacacacac acacacacac acacacacac
  acacacacac aTATATGAAA GTACAGTGCA CAGGGAAATG CAATATATTA TATTTTATGT
  ATATGTATGA TGTCTCATAT ATATCATATA TATGTGCCTG TTTTTCAGGC ATACCCTCTC
  S
  CAGTTGGACA GTAAAGGCAA GGTCCATGTG GATCATAAAT TCGTCTTATG GCACATATGT
  CCCCTCTCAT GGATGAAGTA ACTCTGATTG GGTCAAGAGA GCATGGGTAA GACATATGCA
  CTCCTTACTG GTTCTGTTCA CTGTGTACTC                                 
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320072669	CHEV_1_158679666	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs246089977					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:156577105 () rs orientation: forward

Symbol	Name	Function Class
Cpgi902	CpG island 902	853 bp distal
Gm39683	predicted gene, 39683	within coordinates
Rr421242	regulatory region 421242	570 bp distal
Rr421243	regulatory region 421243	within coordinates
Rr421244	regulatory region 421244	371 bp proximal