rs246089014 SNP Detail

Summary

• ID
  rs246089014
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:69553049 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCACGTCCC GAAAGTAGCT
  CATCTTTGTT ACTAGCTTTT GAGCGTTTGC TGAAGGTTCC TTGGAGGCAG AACGTCTCTC
  TAAATACCTC GACAGAGGAT GTCACTGTTT ATAAAGTGAT GCGCATCATT TCGGGAGCGC
  TGTGACATTC TGACGGATCC ACACCGATCC AATCAACTCT CAGAAACCAT CAAGCGACCC
  R
  TCGGGAACGT ATTTTAAAAG GCAGAAGAGA CCCTACAAGC TCAAGGAGAA GATGCTGACG
  TCAGCCCGGG AACGCCGGGA GTCGCCGGCA CCCATCCCTG ACGTACTTCC GGCGCGACAC
  CTTCCCTCCA CGCCTGGCCT GGGCTGTGGG GGAGGGAGGC GGTTAGTGGG CTTTAGCGCC
  TTTCCTGACG GCGGTAGATT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss354377087	MGP_WTSI_2_69560762	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs246089014					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss354377087	MGP_WTSI_2_69560762	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:69553049 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11715	CpG island 11715	within coordinates
Ppig	peptidyl-prolyl isomerase G (cyclophilin G)	Noncoding-Transcript-Variant
Rr397018	regulatory region 397018	within coordinates
Rr558457	regulatory region 558457	within coordinates
Rr558458	regulatory region 558458	68 bp proximal
Rr558459	regulatory region 558459	399 bp proximal
Tssr18132	transcription start site region 18132	92 bp upstream
Tssr18133	transcription start site region 18133	155 bp upstream
Tssr18134	transcription start site region 18134	334 bp upstream
Tssr18135	transcription start site region 18135	366 bp upstream
Tssr18136	transcription start site region 18136	543 bp upstream
Tssr24445	transcription start site region 24445	42 bp downstream