rs246079664 SNP Detail

Summary

• ID
  rs246079664
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:81844760 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGGTTTCT GAGGAATGTT
  ACAACTCCAG CCTAATTTCC ACATGAGAGC AGTCCAGGCC TCTTATCTGC AGAGCTATCT
  TTTATCTCTA CCAGATGCAA ACAGCCCTTT CTGCTTCTGA CTTCCAGTAA ACATTGTTTT
  TGTTTTTTCT GACAGTGGGG TTGGAAGCAT TTCCAAGCAA TACTAAAACA ACTTTGCTAC
  K
  CCAGTAAAGC AAATTAGAAT AAGAAAGAGA TTACAAGAGT ACATAGGATT ATCATACAAT
  TAAAGTTTTG TTTTGTCGTG TGAGCTATAT AAGCATGCAT GCATGCATGT ATGTATGTAT
  GTGTGTGTAT ATATATATAT GTATACACAC ACACATATAT ATGCATAACT GCACACATAT
  ACACATGCAT GCTGTCACAT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320817207	CHEV_3_81741375	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs246079664					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:81844760 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ctso	cathepsin O			Intron
				Noncoding-Transcript-Variant
Rr578733	regulatory region 578733			1530 bp proximal