rs246008400 SNP Detail

Summary

• ID
  rs246008400
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:60407201 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGCCTATGA TTGTGTGCAC
  GTGGAAGCCA GGGGTCCACA TTAGGTGTCT TCTGAAATTT ACCTTCCATC TTATTACTTA
  CTTTTTTGAG TGTCTCTCAT TGAGTCTGGA ATTCAGAGTT AACTGGCTAA TGGGCTGTGA
  ATATCTCCCA TTCTCTACCT GATCCCAGCA CTGTGGTTAC AGACACTTGC CTAGATGTTC
  K
  GAATTTGAAC TCAGGTTCTC AGACCTGAGC TCCAGCTTCT TTACGCAGGA GTCATCTCCC
  TAGCCAGCTA GCCTATCCAG GCAACTCTCT TTTTATCTTA GCAACTTCTG CACATCCTTC
  AAGGCGCTGC TTGCATAAGT TCCTCCAGGG AGCCTTCCCT CCTTTTCTCA AGGGCATTTT
  GGATATTTGC CTACCATCTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358137390	MGP_WTSI_3_60303702	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs246008400					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358137390	MGP_WTSI_3_60303702	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:60407201 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13210	CpG island 13210	934 bp proximal
Mbnl1	muscleblind like splicing regulator 1	Intron
Rr577409	regulatory region 577409	92 bp distal
Rr577410	regulatory region 577410	909 bp proximal
Tssr29277	transcription start site region 29277	1851 bp downstream
Tssr29278	transcription start site region 29278	901 bp upstream
Tssr29279	transcription start site region 29279	977 bp upstream
Tssr29280	transcription start site region 29280	1434 bp upstream
Tssr29281	transcription start site region 29281	1477 bp upstream
Tssr29282	transcription start site region 29282	1597 bp upstream
Tssr33421	transcription start site region 33421	1948 bp downstream