rs246004181 SNP Detail

Summary

• ID
  rs246004181
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:138171724 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    tgagctaaa tacctaataa aaaatggaaa
  aaaaaaAAAA AAGATGTTAC CTAGTTCTTT TCAAATTAGA GTAGTTTTTG TCAAAAAAAA
  AAACAAAACA AAACTaattt gacagaagct tgagttatct gggaagaagg aacctcgact
  W
  aaaaaaaatg cctccattag actggtctag aattaagtaa gtctttgggg attttcttga
  ttagtcattt atatgggagg gttcagccca ctgggaatca tgccatctct gagcaggagg
  tcctggacgg cataagaaac ttagctaaag                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320000286	CHEV_1_140140563	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs246004181					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:138171724 () rs orientation: forward

Symbol	Name	Function Class
Gm53479	predicted gene, 53479	255 bp upstream
Rr419685	regulatory region 419685	within coordinates
Rr419686	regulatory region 419686	167 bp proximal
Rr419687	regulatory region 419687	572 bp proximal
Rr419688	regulatory region 419688	1563 bp proximal