rs245996298 SNP Detail

Summary

• ID
  rs245996298
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:155379089 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCCTTCCC GAAGCCCATG
  CCACACTCAA GAGTCTGCAT GAAAACTCGG ACAGTCGATG CGGAAGATAC CACATGGAGA
  GGGGCCTGGC ACCTCCTTCC TGAATGCGGA CCCAGTCTAG CTCAGTAGTT CCCTTCTTGG
  GCTCCCATGA GGGCCAGAAG GAGTGAGGCC AGGTGAGGCC GCTGTGCCGC AGGGCTCAGC
  K
  GTGGTGCCTG CCATGTGGTT CTATTTGAGT CAGACAGCCC AGGCCAAGAG GAGCTCAGTG
  GCGTTGGAAG CTCCTGACAT TCTGGCTTGG AAGACTGCGA ACGGCTTCGT GACAGCTGTG
  TGAGGGTTTT ATAGTCATGA TCCTAATAAT CTAAACGTGA TCATTGTCAG CCCTGCTGCT
  GGTACTTGCA GGACTTTTGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321441556	CHEV_4_154668741	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs245996298					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:155379089 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Prkcz	protein kinase C, zeta			Intron
				Noncoding-Transcript-Variant
Rr606443	regulatory region 606443			1045 bp proximal
Rr606444	regulatory region 606444			1620 bp proximal