rs245974609 SNP Detail

Summary

• ID
  rs245974609
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:148693945 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGACTCGCT CTCAGCCACA
  ACCCAGGGAC TAGTCCCCGC CAAGCCAGGG GCCCAACACC TGGAGCGGGA CAACCTCGAG
  TACGCACTGG ACAGTCCCAT CCCCAGCTCT ACTGCGTGAA GGACCAAGGG CACCTTCCGG
  TCCCTATTAA GATTTTTAAG AATCGCCCCC CCACCACCAC CACCTTTAAA ATAAAAAGCA
  R
  GGTTAGTCTG GAGCTGGGTC GCAGACCTGA GCTCCCGCCT TCTCGGTCCC CAGCAGCCAG
  CCTGATTCCC GAGAGCGTGA CAATAGCCGC ACGCGGCCCG GCTAGCCGGC TGCACCGCAC
  AGAGTTCTGC GGATCGATGT CGGCGGGAAG GGTTGCGCAC GAGTGGCCAG CGCGGGTCTG
  TCCCCGCGAC ACGGCCAACC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss360182856	MGP_WTSI_3_148651273	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G	G	G	G	A	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs245974609					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G	G	G	G	A	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss360182856	MGP_WTSI_3_148651273	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:148693945 () rs orientation: forward

Symbol	Name	Function Class
Adgrl2	adhesion G protein-coupled receptor L2	Intron
Cpgi13930	CpG island 13930	within coordinates
Gm43573	predicted gene 43573	within coordinates
Rr587240	regulatory region 587240	665 bp distal
Rr587241	regulatory region 587241	336 bp proximal
Rr587242	regulatory region 587242	1008 bp proximal
Tssr36077	transcription start site region 36077	785 bp downstream
Tssr36078	transcription start site region 36078	793 bp downstream
Tssr36079	transcription start site region 36079	1039 bp downstream
Tssr36080	transcription start site region 36080	1069 bp downstream
Tssr36081	transcription start site region 36081	1096 bp downstream
Tssr36082	transcription start site region 36082	1134 bp downstream
Tssr36083	transcription start site region 36083	1204 bp downstream
Tssr36084	transcription start site region 36084	1223 bp downstream
Tssr36085	transcription start site region 36085	1247 bp downstream
Tssr36086	transcription start site region 36086	1403 bp downstream
Tssr36087	transcription start site region 36087	1677 bp downstream
Tssr36088	transcription start site region 36088	1791 bp downstream