rs245973472 SNP Detail

Summary

• ID
  rs245973472
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:109764697 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGGATCTAG GATACTGCTT
  GTTGGACTAA AGGACTCACT AATCACCTTT CCCAACCCTG CCCAGGTATA CCACCTCTAG
  TAAACAGACT TAACTAGTCT TTGAAGGCAG TAGTTCTTTT CAATGAATTC CTATTTATTT
  ATTTTCTTAT TTATCACCGT CTGTAAACAG GCTTTGAAGG CAGCATGTGT TATAAGATGT
  R
  TTTATTCAAG CCTACCAGGG GTCCTTAACC TGGGGGTTGA CTCAAGTAGA ACATTTTAGG
  ATCCAGGGTT ATTCATGAAA CTGGGTGAGC TGTTTCAACT TTTAGGCAGA CGTGCAGTGT
  TTTTGGAAGG AAGTCCAGTA GTTTTTCTGA TTACCAAAGA GTTCTTAAGT TTAGTTTGTG
  GGTCCAGGGC TCGGAACAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322394799	CHEV_7_117309004	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs245973472					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:109764697 () rs orientation: forward

Symbol	Name	Function Class
Gm72506	predicted gene, 72506	within coordinates
Gm72511	predicted gene, 72511	555 bp upstream
Rr1426	regulatory region 1426	within coordinates
Rr407345	regulatory region 407345	1080 bp distal
Rr653201	regulatory region 653201	566 bp distal
Rr653202	regulatory region 653202	1170 bp distal
Rr653203	regulatory region 653203	551 bp distal
Rr653204	regulatory region 653204	495 bp distal
Rr653205	regulatory region 653205	496 bp distal
Rr653206	regulatory region 653206	within coordinates
Rr653207	regulatory region 653207	560 bp proximal
Rr653208	regulatory region 653208	993 bp proximal
Tssr2367	transcription start site region 2367	564 bp upstream
Tssr2368	transcription start site region 2368	736 bp downstream
Tssr68492	transcription start site region 68492	1169 bp downstream
Tssr74253	transcription start site region 74253	615 bp upstream
Tssr74254	transcription start site region 74254	862 bp downstream