rs245924575 SNP Detail

Summary

• ID
  rs245924575
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:76238099 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GTCAGTACT TGAAATAGGT CTGGCACATA
  GTATCTGAAT GAGGAAAGTT AAGGCAAGGA AAACCAAATA AGAGTAACAT TAGAAAATCA
  TAAACAGCCG TAATTACATT CCAAGGGGCT ATTAAAAGTA AAACACTCAA AATCTTGGAC
  R
  TTGCTGTATC CTTCACACTT GGGGCCTCAA CACAGACAAT GATCAGAGAT AATGGGAAGT
  TAAATGTGGT TGTTTCTTTT TCAAAGCAAA TCCCTATGCA CTCAGTCAAG TGGTCTGAAG
  TATATACACA TGTTGGCTTG GTGACACAAT                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321170485	CHEV_4_75965766	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs245924575					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:76238099 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ptprd	protein tyrosine phosphatase receptor type D			Intron
				Noncoding-Transcript-Variant
Rr594082	regulatory region 594082			1657 bp distal
Rr594083	regulatory region 594083			1816 bp distal
Rr594084	regulatory region 594084			46 bp proximal