rs245917126 SNP Detail

Summary

• ID
  rs245917126
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:21984571 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AACAACTAC CTATACTGCT CATAACACCC
  AGTAAACAGC TTTACCATAC TCTGGGTCTT ATTAACATAG AAACCATTCC AGTTTAGAGG
  TCTAGTAATT CCTATTGGCC TTCAAAATAT ATTACATCCA CACAAAACCT GTGGCATGCA
  R
  CAGTGATGCT CTTTCAATGT CTATATGTGA AAACCAGGTT AATTTTCTCC CATTCCCTTA
  TTTGTCATGG TATTGAAGAC TGAATTTATA TATTAAATAG TAGTAAAACA TTTTATAGAC
  TATATGTAAA TAGACTGAGG TAAGTTATTG                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321763917	CHEV_6_21934572	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs245917126					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:21984571 () rs orientation: forward

Symbol	Name	Function Class
Cped1	cadherin-like and PC-esterase domain containing 1	1344 bp upstream
Cpgi17190	CpG island 17190	1195 bp proximal
Rr627034	regulatory region 627034	508 bp proximal
Rr627035	regulatory region 627035	854 bp proximal
Rr627036	regulatory region 627036	1534 bp proximal
Tssr1788	transcription start site region 1788	1681 bp upstream
Tssr55139	transcription start site region 55139	1331 bp upstream
Tssr55140	transcription start site region 55140	1406 bp upstream
Tssr55141	transcription start site region 55141	1559 bp upstream
Tssr55142	transcription start site region 55142	1583 bp upstream
Tssr55143	transcription start site region 55143	1609 bp upstream
Tssr55144	transcription start site region 55144	1779 bp upstream
Tssr55145	transcription start site region 55145	1806 bp upstream
Tssr55146	transcription start site region 55146	1866 bp upstream