rs245872141 SNP Detail

Summary

• ID
  rs245872141
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:132485243 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACTAGAAAC TGGGCAAAAG
  GGAGATAAGA TGGTGTTGTC CCCCTGAACA TGCCTTGAGA GCCTGAGGGC TGAATCACTC
  CTTAGCAAGT TACCTAACCT GAGAAGACAG AGAGAGCTGT GACTCAAGTC TGAGGAAGGC
  GATGAGAGGT TTCTGGAAGG AGATGACATA AACTTACTCC CTTTGTTTTG ATTTTTTTTT
  Y
  CCCTTGCAGT TAGGGATGGT TTGGGCTTTG TCTTTTTGTG GTTTATTTAT TTCTATTTGT
  TCTTTTTGTT TTTTTGCTCC TGTTGTTGTC CGTACAGGGA TGAAACCCAG ATCTTCACTC
  AAGCAAGGCA AACTGTCTAG CTCACCGCCA CACTCCCACG CCTAACCAGC TTGAACTTGA
  TGAACACAGG AGAAAACAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321336235	CHEV_4_132313847	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs245872141					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132485243 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14971	CpG island 14971	601 bp distal
Gm70165	predicted gene, 70165	270 bp upstream
Rr601063	regulatory region 601063	691 bp distal
Rr601064	regulatory region 601064	417 bp distal
Smpdl3b	sphingomyelin phosphodiesterase, acid-like 3B	685 bp upstream
Tssr43702	transcription start site region 43702	825 bp upstream
Tssr43703	transcription start site region 43703	780 bp upstream
Tssr43704	transcription start site region 43704	745 bp upstream
Tssr43705	transcription start site region 43705	692 bp upstream
Tssr43706	transcription start site region 43706	673 bp upstream