rs245854874 SNP Detail

Summary

• ID
  rs245854874
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:43904162 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGAAAACC CAGGGTGAGA
  TCTCATCTCT CAGATTGGCC TTTTTTTTAA GGTTTAAGAA GCTGAAGAGT AGGCTCGGTG
  GTTCAGACCA CTTGCTGCTT TTACAAAGGA CCTAGATTCA ATTCCTAGCA CCACATGGCT
  GCCCACGACC ATCTGTAACT CTAACCCTAC AGGACCCAAC ACCCTCTGTT GCCACTAAGT
  Y
  GTGAGGCATG CATGCGATGG ATGCTAATAT AACTAGATTG TTCTGCTGAT GACCACTGGG
  TCTGTGAGAA TGCTAAGATA AAGGCAGCAC AGAGGCCCTA GACCACAGAG CCTAAGGCGA
  GTTCCACCTT ACAGCTGTCT GCACCACTGC CAGCACATGG CTACGTGTGA CAAGTGCAGG
  TTTGTGTAAA ACTGTATTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321099250	CHEV_4_43917034	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs245854874					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:43904162 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm56265	predicted gene, 56265			916 bp upstream
Reck	reversion-inducing-cysteine-rich protein with kazal motifs			Intron
				Noncoding-Transcript-Variant
Rr591101	regulatory region 591101			191 bp distal