rs245847781 SNP Detail

Summary

• ID
  rs245847781
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:32683532 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAACTTTTC TTAGTGCTTA
  AAATGTTTAC TCTTCATCAT GACTATGTCA CACACTTGAA GTGTGAAACT AGATCACAGC
  TGAACACTGA CGAAGTCCTC GGTGCTGTTA GCCATATCTC TGACTTTGAT TAGTTTGCAT
  TGTGTTGTTT CCTACTTTCT GCTTTAGGAA TTTGTAAAAT TACCTTTTTA CCCCCCCCCC
  S
  CCCCCCCCAG GTTCAAGCCA GTGGACCATA AGCTTATTTG GTTGCCTCTA CGAGAGACAT
  TTGAGGAACT ATTTGTCCAG ACATTTTCCA AAAAGCAAAA CTTTACCTTT TTGGGACACA
  TTCAGACCTG CTACAGGCAG AAACGATGGC ATGATCTGCT CAAACTAATG CTGCACGTAC
  AGAAGTCGGC CAGTACCAAA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	C3H/HeJ	C57BL/6J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	KK/HlJ	LP/J	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PWK/PhJ	QSi5/Ianm	RIIIS/J	SJL/J	SWR/J	WSB/EiJ
ss361102018	MGP_WTSI_4_32770507	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	C	G	G	C	G	G	G	G	G	C	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	C3H/HeJ	C57BL/6J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	KK/HlJ	LP/J	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PWK/PhJ	QSi5/Ianm	RIIIS/J	SJL/J	SWR/J	WSB/EiJ
rs245847781					SNP	G	G	G	G	G	G	G	C	G	G	C	G	G	G	G	G	C	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss361102018	MGP_WTSI_4_32770507	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:32683532 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mdn1	midasin AAA ATPase 1			Intron
				Noncoding-Transcript-Variant
Rr590034	regulatory region 590034			767 bp distal