rs245837639 SNP Detail

Summary

• ID
  rs245837639
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:113599663 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGTTCATC AGCCCCTGGA
  TGAGCTCACA CATGCACACC CGTACATTTT TAATTTTTTG TTTATTTATT TACTTTGGTT
  TTTTGGGTTT TTGAGACAAG GTTTCTCTGT CTGTCCTGGA ACTCACTTTG TAGACCAGGC
  TGGCCTCGAA CTCAGAAATC CTCCTGCCTC TGCCTCCCAA GTGCTGGGAT TAAAGGCGTG
  S
  GCCACCACTG CCCGGCCCGT ACATTTAAAA AAAGCTCATC TGATGAAACT TCTGCCAGAA
  ATGTCTATGG AAAAATGGCA CTGAATGTTA TCTGATAGTA GTTGTATGCT AATTCTTTGA
  ACCAGTCATG GTAGCACATA TCTAGAATGC CAGTACTTGG GAGGCAGACA CAGGAGTGCC
  ACTAATTTGA GGCCAGCCTG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321911139	CHEV_6_113572696	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs245837639					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113599663 () rs orientation: forward

Symbol	Name	Function Class
Rr636555	regulatory region 636555	879 bp proximal
Tssr58233	transcription start site region 58233	1286 bp upstream
Tssr58234	transcription start site region 58234	1346 bp upstream
Tssr58235	transcription start site region 58235	1424 bp upstream
Tssr58236	transcription start site region 58236	1965 bp upstream
Tssr62461	transcription start site region 62461	826 bp downstream
Vhl	von Hippel-Lindau tumor suppressor	1292 bp upstream