rs245827501 SNP Detail

Summary

• ID
  rs245827501
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:137572010 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTAAAGCGT ATCACCCCTC
  GTCACTTGCA GCTTGCTATA CGTGGAGATG AAGAATTGGA TTCTCTGATC AAAGCTACCA
  TTGCTGGTGG TGGTATGTCA TCCCTAAACT CCTAACATTC TATTTAAGAA GAAAATTCCT
  ACACTCCCAT TGTTTCTAGA AGAGATTTCA GTACAGGGTG CTTTCATGGG GTTTGGCTTT
  M
  CACTTAGTTT TTGCTAAGAT CATTGTTCAT CCCTCAAGTT TTCACTTTGT ATATGAATTT
  TACCTGCTTT GAGTTCATGT ATTGTTTTTT TAAATGTTTA TCCAGAAGGT AGACTTAATC
  TGTGTCCCTC TCCTAGGTGT CATCCCACAC ATCCACAAAT CGCTGATCGG GAAGAAAGGA
  CAACAGAAGA CTGTTTAAGG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359894913	MGP_WTSI_3_137529213	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs245827501					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359894913	MGP_WTSI_3_137529213	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:137572010 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13866	CpG island 13866	421 bp distal
Cpgi13867	CpG island 13867	1102 bp proximal
Dnajb14	DnaJ heat shock protein family (Hsp40) member B14	791 bp upstream
Gm43403	predicted gene 43403	1923 bp upstream
H2az1	H2A.Z variant histone 1	Intron
Rr367565	regulatory region 367565	1742 bp downstream
Rr398061	regulatory region 398061	244 bp downstream
Rr585998	regulatory region 585998	1752 bp distal
Rr585999	regulatory region 585999	1933 bp distal
Rr586000	regulatory region 586000	1626 bp distal
Rr586001	regulatory region 586001	1655 bp distal
Rr586002	regulatory region 586002	1515 bp distal
Rr586003	regulatory region 586003	1014 bp distal
Rr586004	regulatory region 586004	477 bp distal
Rr586005	regulatory region 586005	within coordinates
Rr586006	regulatory region 586006	936 bp proximal
Rr586007	regulatory region 586007	1506 bp proximal
Tssr31912	transcription start site region 31912	1724 bp downstream
Tssr31913	transcription start site region 31913	1685 bp downstream
Tssr31914	transcription start site region 31914	1658 bp downstream
Tssr31915	transcription start site region 31915	1128 bp downstream
Tssr31916	transcription start site region 31916	378 bp downstream
Tssr31917	transcription start site region 31917	311 bp downstream
Tssr31918	transcription start site region 31918	1509 bp upstream
Tssr31919	transcription start site region 31919	1558 bp upstream
Tssr31920	transcription start site region 31920	1610 bp upstream
Tssr31921	transcription start site region 31921	1629 bp upstream
Tssr31922	transcription start site region 31922	1709 bp upstream
Tssr31923	transcription start site region 31923	1813 bp upstream
Tssr31924	transcription start site region 31924	1828 bp upstream
Tssr31925	transcription start site region 31925	1872 bp upstream
Tssr35855	transcription start site region 35855	1918 bp upstream