rs245817859 SNP Detail

Summary

• ID
  rs245817859
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:141889014 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTGATGAAC AGCAGTATGG
  AAGTGTAAGC TGAATAAACC CTTCCCTCCC CAGCTTGCTT CTTGGTCCTG ATGTTTGTGC
  AGGAATAGAA ACCCTGACTA ATACACCTAG GATTCTGATT TGTTGCATCG TAAGTCTTAC
  CCTGTGAGAA CCAGTCTTTG CCCTCAGGCG CTTAGAGGCT CACCAGCGTC AGGATGCCTT
  S
  AGACAGGAAG GACCCCATGC CCCTGTGTCT GAGGGGCTCC CCATGATGTG CAACCCAAGT
  CGTTCCCAAC TCACGGGAAG TGGGTACCCG CTCTAAGGTC CTGGGCCCTG TCCAACTCCG
  GCTGTACCGC ACTAGGCTTC GGACCTAGCA TCTGAGGAAG CTTTGGGAGG GAAGGCCATG
  TTTAAGTCAA CCTAACTGAC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321393244	CHEV_4_141717618	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs245817859					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141889014 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Kazn	kazrin, periplakin interacting protein			Intron
				Noncoding-Transcript-Variant
Rr604011	regulatory region 604011			1221 bp distal
Rr604012	regulatory region 604012			525 bp proximal
Rr604013	regulatory region 604013			593 bp proximal
Rr604014	regulatory region 604014			654 bp proximal
Rr604015	regulatory region 604015			922 bp proximal