rs245785429 SNP Detail

Summary

• ID
  rs245785429
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:8640117 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCGGTTCT GTCCTGCGGT
  TCTGTCCTGT GGCTCTGTCC TGCGGTTCTG TCCTGCGGTT CTGTCCTGTG GTTCTGTCCT
  GTGGCTCTGT CCTGCGGTTC TGTCCTGTGG TTCTGTCCTG CGGTTCTGTC CTGCGGTTCT
  GACCCTGTGG CTCTGTCCTG CGGTTCTGTC CTGCGGTTCT GTCCTGCGGT TCTGACCCTG
  T
  GGCTCTGTCC TGCGGTTCTG TCCTGCGGTT CTGTCCTGTG GTTCTGTCCT GCGGTTCTGT
  CCTGTGGAAT AAGCTGGTTT TCATTTCAAA GTAACTCTTA GCTGATCATC TTACCTGATC
  ATCTTAGCTG ATGATGGTCC TAGAATTCCT AAACGTCACT TTGGTTTGAT GACATCTTAT
  AGTGCGGATG GTGTTCCTAG                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	ST/bJ	SWR/J	WSB/EiJ
ss379371147	MGP_WTSI_10_8484151	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	ST/bJ	SWR/J	WSB/EiJ
rs245785429					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss379371147	MGP_WTSI_10_8484151	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:8640117 () rs orientation: forward

Symbol	Name	Function Class
Rr384117	regulatory region 384117	1334 bp downstream
Rr427376	regulatory region 427376	1022 bp distal
Rr427377	regulatory region 427377	828 bp distal
Rr427378	regulatory region 427378	1926 bp proximal
Sash1	SAM and SH3 domain containing 1	Intron
Tssr3133	transcription start site region 3133	1957 bp upstream
Tssr96643	transcription start site region 96643	1983 bp upstream
Tssr96644	transcription start site region 96644	1887 bp upstream
Tssr96645	transcription start site region 96645	1737 bp upstream