rs245780512 SNP Detail

Summary

• ID
  rs245780512
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:113600655 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AAAAAAAAT CCAACTgccc ttggtccctg
  ttctctggag tctgaggcag ggagatcttt gagttcagga caagccggat atacataatg
  agttctaggc ctacatagtg agaccctacc tcaaaGCAAG TCTTTCTggc atggagataa
  Y
  ggctttaatc ccagtactct ggaagcagag gcaggcagat ctccgagagt tcgaggccag
  actgatctag ggtgtgagtt ccaggacagc caggattaca cgaagaaact ctatcttggg
  ggaaaaaaaa aaaaGAAGGA AAAAGAAAAG                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321911156	CHEV_6_113573688	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs245780512					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113600655 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17851	CpG island 17851	within coordinates
Rr636555	regulatory region 636555	within coordinates
Tssr58233	transcription start site region 58233	294 bp upstream
Tssr58234	transcription start site region 58234	354 bp upstream
Tssr58235	transcription start site region 58235	432 bp upstream
Tssr58236	transcription start site region 58236	973 bp upstream
Tssr62461	transcription start site region 62461	162 bp upstream
Vhl	von Hippel-Lindau tumor suppressor	300 bp upstream