rs245715216 SNP Detail

Summary

• ID
  rs245715216
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:44073019 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTGGCGCA CCTTCCGCTG
  TCGTGTCGCC TCTGGTAGTG GCATCCACTC GGTTTGCTGA CCCTTATTCT CGCCTGAGGG
  TGTTCTCTCC TCTGGCAGAG CCCACAGTTA AGCCCGAGTT CTCCCACGAG ATGGTTGTTT
  TAGCTTTGCA CCCAAGCTGA GTGCCATCTC GTGGACCAAA CTCCAAGGCA ACTCAGTGTC
  S
  GTAGTCCTAG AGTGCACCCT GGAATTTAAG CTTTGCCACC CCTGCCACGA GGCTCTGGCT
  GAGTGCAGCG TGACAATACA CATGCTAGTC AGCTCTGAGT TATCTGTCAC TCCAGGGATC
  TAGGCAATTC TATTACCAAA TTTGGGCCTC ACAGTTTTTC CCCTTGAAGC CAAATTCTGT
  CACCTGTTCT CCATAAGTTA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321100043	CHEV_4_44085891	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs245715216					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:44073019 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi14207	CpG island 14207			within coordinates
Gne	glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase			Intron
				mRNA-UTR
Rr591149	regulatory region 591149			252 bp distal
Rr591150	regulatory region 591150			within coordinates
Rr591151	regulatory region 591151			22 bp distal
Rr591152	regulatory region 591152			704 bp proximal
Tssr41482	transcription start site region 41482			462 bp upstream
Tssr41483	transcription start site region 41483			326 bp upstream
Tssr41484	transcription start site region 41484			288 bp upstream
Tssr41485	transcription start site region 41485			within coordinates