rs245711998 SNP Detail

Summary

• ID
  rs245711998
• Variation Type
  SNP
• Alleles
  C/G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:138451372 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACGGC AGCCATGGCG CCTTCAGAGA
  B
  ACACACACAC ACACCCTGGG TCCCA                                      
  
  B = C/G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	FVB/NJ	I/LnJ	JF1/MsJ	LG/J	LP/J	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	QSi5/Ianm	RF/J	SEA/GnJ	SM/J	SPRET/EiJ
ss917106062	MGP_WTSI_4_138724061	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	C	T	T	C	C	C	T	T	T	T	T	T	T	C	C	C	T	C	C	C	T	C	T	T	T	T	T	C	T	C	T	C	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	FVB/NJ	I/LnJ	JF1/MsJ	LG/J	LP/J	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	QSi5/Ianm	RF/J	SEA/GnJ	SM/J	SPRET/EiJ
rs245711998					SNP	T	T	T	T	C	T	T	C	C	C	T	T	T	T	T	T	T	C	C	C	T	C	C	C	T	C	T	T	T	T	T	C	T	C	T	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss917106062	MGP_WTSI_4_138724061	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:138451372 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Pla2g2c	phospholipase A2, group IIC			1264 bp upstream
Rr602997	regulatory region 602997			287 bp distal
Rr602998	regulatory region 602998			within coordinates
Rr602999	regulatory region 602999			635 bp proximal
Rr603000	regulatory region 603000			785 bp proximal
Rr603001	regulatory region 603001			1275 bp proximal
Rr603002	regulatory region 603002			1655 bp proximal
Tssr39875	transcription start site region 39875			1221 bp upstream
Tssr44173	transcription start site region 44173			1149 bp downstream
Tssr44174	transcription start site region 44174			1201 bp downstream
Ubxn10	UBX domain protein 10			Intron
				Noncoding-Transcript-Variant