rs245666602 SNP Detail

Summary

• ID
  rs245666602
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:77646697 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACCCT GGGGACTCCT TGCCCGACGA
  R
  CTCCTACGTC CTACTCCTAC GTCCT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320358144	CHEV_2_77654410	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs245666602					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:77646697 () rs orientation: forward

Symbol	Name	Function Class
Rr559844	regulatory region 559844	within coordinates
Rr559845	regulatory region 559845	453 bp proximal
Rr559846	regulatory region 559846	635 bp proximal
Rr559847	regulatory region 559847	704 bp proximal
Tssr24865	transcription start site region 24865	240 bp downstream
Tssr24866	transcription start site region 24866	327 bp downstream
Tssr24867	transcription start site region 24867	357 bp downstream
Tssr24868	transcription start site region 24868	383 bp downstream
Tssr24869	transcription start site region 24869	405 bp downstream
Tssr24870	transcription start site region 24870	526 bp downstream
Tssr24871	transcription start site region 24871	1072 bp downstream
Tssr24872	transcription start site region 24872	1138 bp downstream
Tssr24873	transcription start site region 24873	1315 bp downstream
Zfp385b	zinc finger protein 385B	Intron