rs245661698 SNP Detail

Summary

• ID
  rs245661698
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:102970835 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AGCACTTAA CTCAAGGGCA AATGCAAGGC
  TCTCTCCTCA GAACTTTCAG TAAGTTCAAA GGGCGAATTA GCTGAGAGGA TGTTGGAAGA
  AAAGATGTGG CTGCTCTGGG AAGACCGCAA AACCACTGAA ATGTTCGAGC ATGAAAGGGG
  A
  AATATTTTAA TGAAAATTCA AACCACTTCC AAGTTCAACG CCACACGAGT CCACATTATC
  TTTGGGCCTT TCTCCTAGCT TAGCGGCATG AACTAAGCAG TTAAGAGTCT TAAGGTAAGC
  TGGCAGAAAG AGATGAAAAA AAAAAATCCT                                 
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321235892	CHEV_4_102786243	CHEVERUD	SCREENING_POP	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs245661698					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:102970835 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi14511	CpG island 14511			259 bp proximal
Dnai4	dynein axonemal intermediate chain 4			Intron
				Noncoding-Transcript-Variant
E030030F06Rik	RIKEN cDNA E030030F06 gene			within coordinates
Mier1	MEIR1 treanscription regulator			752 bp upstream
Rr596355	regulatory region 596355			540 bp distal
Rr596356	regulatory region 596356			267 bp proximal
Rr596357	regulatory region 596357			768 bp proximal
Rr596358	regulatory region 596358			907 bp proximal
Tssr38082	transcription start site region 38082			747 bp upstream
Tssr38083	transcription start site region 38083			764 bp upstream
Tssr38084	transcription start site region 38084			824 bp upstream
Tssr38085	transcription start site region 38085			1074 bp upstream
Tssr38086	transcription start site region 38086			1138 bp upstream
Tssr38087	transcription start site region 38087			1278 bp upstream
Tssr42583	transcription start site region 42583			572 bp downstream
Tssr42584	transcription start site region 42584			584 bp downstream
Tssr42585	transcription start site region 42585			600 bp downstream
Tssr42586	transcription start site region 42586			667 bp downstream
Tssr42587	transcription start site region 42587			678 bp downstream
Tssr42588	transcription start site region 42588			719 bp downstream
Tssr42589	transcription start site region 42589			924 bp downstream
Tssr42590	transcription start site region 42590			1174 bp downstream