rs245653310 SNP Detail

Summary

• ID
  rs245653310
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:30065409 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATTAACTCA CCATAAACTT
  CAAGAACTCG GTTCTGAGCG TTCCAGGCTA AAGCACTATG AATAAGTCCT TGACCATGAG
  GCCCTCAAAG GGCAGTAAGT CGTTGCAGGA CTTTAAAAAG AAAAACAATA ACGGAAGAGA
  AAGACAATAA TTGCTCCCTC CCCCTCCTTC CATCTCTCCA CACTAACAGA GAGTTAAATA
  S
  CCTTTCTATG GAAGACACAT TTTAACAAAT ACGTTACTTA TAAAATTCCA GGCTCTAAGA
  TGTTCCTTCA GCTCTCAAGG CTGAGCAATG CAAATGGCCC TGAGATCTCT CCCAGTCCCA
  GAAACAGAGT GAATAATTAG CACAGATTCT AAAGTCTGCT GCTCTTCTTT AAGTGGGATT
  GTTGTTTTGT TTGGGAATTT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss357407748	MGP_WTSI_3_29910182	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs245653310					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357407748	MGP_WTSI_3_29910182	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:30065409 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13032	CpG island 13032			996 bp proximal
Mecom	MDS1 and EVI1 complex locus			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr574700	regulatory region 574700			372 bp distal
Rr574701	regulatory region 574701			629 bp proximal
Rr574702	regulatory region 574702			1130 bp proximal
Rr574703	regulatory region 574703			1886 bp proximal
Tssr28678	transcription start site region 28678			938 bp upstream
Tssr32873	transcription start site region 32873			1626 bp downstream
Tssr32874	transcription start site region 32874			1744 bp downstream
Tssr32875	transcription start site region 32875			1765 bp downstream
Tssr32876	transcription start site region 32876			1876 bp downstream
Tssr32877	transcription start site region 32877			1897 bp downstream
Tssr32878	transcription start site region 32878			1972 bp downstream
Tssr32879	transcription start site region 32879			1987 bp downstream