rs245601270 SNP Detail

Summary

• ID
  rs245601270
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:100728991 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGAGACAG CATGCATTTT
  AGAATTCTGC ATTGCAGAAG TGTGTCAAAT GCCCCCTAGA GGCTGCCTGT GGGAACAATG
  ACACATGTAA ACTAAATCTT GTTTAATTTA TTTATTTTAT TATATGTGTG TATGTGTACC
  TGGGTGTATG TATATTCACC ATGTGTGTGC ATGAGCCCAC AGACATCAGA AGAAGGCATT
  R
  GAATGGAAGT ACACCAGATC TGAGTACTGT AAGATGCTTT TAACTGCTGA GCCATCTCTC
  CAGCTCCACC TCAAAAGAAG TGTGTGCGTG TGTGTGCGTG TGTGTGTATG TGTGTGTGTG
  TGTGTGTGTG TATGTGCATG TGAGGGTCGT TGCTGTTGTT TACACCAGGT CAGCTGGCTG
  TGAGTTTCCA GAGATTCTCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320849644	CHEV_3_100625598	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs245601270					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:100728991 () rs orientation: forward

Symbol	Name	Function Class
Gm32720	predicted gene, 32720	within coordinates
Rr581910	regulatory region 581910	1488 bp distal
Rr581911	regulatory region 581911	1887 bp distal
Rr581912	regulatory region 581912	9 bp distal
Rr581913	regulatory region 581913	134 bp distal
Rr581914	regulatory region 581914	within coordinates