rs245583171 SNP Detail

Summary

• ID
  rs245583171
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:36665649 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAATCTTGT AATTCATCTT
  GATAAATGTA AACATATCAA AATAATATAT TTCCTTTACA GCTATTAAAA TACCATACTA
  CTCTACAAAA TAATTCGTTT TTGTCTATAA GATGTCAAGC TAATACAAAG TTCAACATTA
  AAAACACTAA CTCAGTAAGG GTAGATTTAA ACCAGGCATG ACTGCACATG CCTACAATCC
  M
  TGAACTTCTG ATGCTGAGGT AGGAAGATCA AGAGTTCGAG GCCAGCCTCA GCCACATCAA
  AGCATGTCTC AAAAATAAAA TAAGTAAAAA CAAAATAGAA ACAACAACAA AATAGAAAGT
  TTACAGAAAT CAATGTTCTG TTGAACTTTA CACTTCGTTT TCCATGGTAC ACAGAGTGAA
  TTATTACCAA AAATGGAGTG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320703479	CHEV_3_36510422	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs245583171					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:36665649 () rs orientation: forward

Symbol	Name	Function Class
Bbs7	Bardet-Biedl syndrome 7	Intron
Cpgi13088	CpG island 13088	1596 bp proximal
Rr575383	regulatory region 575383	1121 bp proximal
Rr575384	regulatory region 575384	1775 bp proximal
Rr575385	regulatory region 575385	1928 bp proximal
Tssr28874	transcription start site region 28874	1982 bp upstream
Tssr33039	transcription start site region 33039	1839 bp downstream
Tssr33040	transcription start site region 33040	1870 bp downstream
Tssr33041	transcription start site region 33041	1918 bp downstream
Tssr33042	transcription start site region 33042	1961 bp downstream
Tssr33043	transcription start site region 33043	1989 bp downstream