rs245535202 SNP Detail

Summary

• ID
  rs245535202
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:138451416 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGTCC CAAACTCTAC CTTTGCCCTC
  C
  GTCTAGGCTC CTGCGACAGC ACAAT                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321376510	CHEV_4_138280020	CHEVERUD	SCREENING_POP	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs245535202					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:138451416 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Pla2g2c	phospholipase A2, group IIC			1220 bp upstream
Rr602997	regulatory region 602997			331 bp distal
Rr602998	regulatory region 602998			within coordinates
Rr602999	regulatory region 602999			591 bp proximal
Rr603000	regulatory region 603000			741 bp proximal
Rr603001	regulatory region 603001			1231 bp proximal
Rr603002	regulatory region 603002			1611 bp proximal
Tssr39875	transcription start site region 39875			1177 bp upstream
Tssr44173	transcription start site region 44173			1105 bp downstream
Tssr44174	transcription start site region 44174			1157 bp downstream
Ubxn10	UBX domain protein 10			Intron
				Noncoding-Transcript-Variant