rs245530392 SNP Detail

Summary

• ID
  rs245530392
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:142121079 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TGGCTGGGC AGATCTGAGA AGGGACCTGT
  CCATCATCAC GTATGGGAGC AGAGGGCACC TAGGTGTCTA TGTTGGGGTT GTAATAAATG
  GTGGGAGCAA AATGGAATTG CTATGAGGGT AACCAGATGG CACAGAATGG ATCTAGAATa
  Y
  acacacacac acacacacac acacacacac acacacacac acatacacac acacacacaT
  CATCAGTCAA GCCAGAGATC AGCACAGATA TGGACTGACA CAAGTTGTGC TCTGACTTCT
  GCATGAATGG ATCTAGAATa cacacacaca                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321395660	CHEV_4_141949683	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs245530392					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:142121079 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm42339	predicted gene, 42339			within coordinates
Kazn	kazrin, periplakin interacting protein			Intron
				Noncoding-Transcript-Variant
Rr604071	regulatory region 604071			539 bp distal
Rr604072	regulatory region 604072			626 bp distal
Rr604073	regulatory region 604073			289 bp distal