rs245522019 SNP Detail

Summary

• ID
  rs245522019
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:118225202 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTTTTTGT GTGGAGGGTG
  GAGGGGGGTG GGGAGAGTGG ATGGGTGGGG GAAATCCGAC AGCTTAAGGA GGTTTGAATT
  GAATATGCAC CCAGCGGCAG TGGTCTCGTA GGAAATGGTG TTCTCGTAAG TCAGGCTGCC
  CCGCTGAAGC ACAAGAGCTG TGGTTAGAGC TCGGAGCGTC AGTTCTGGTG GGAGTGCTGC
  R
  GGCTGTCCGC TTGGGCTGAG CTGTCCACTG GTCCAGGTGC TGAAGTGTGG AGCATTTGGT
  ATGTAGGGAA AGGGCTGACT CTGTTGCTTG GTTAGGAAGA AAACCTATCG CCTGTCTTGT
  TCCAGATTTT TTTTCTTAAA GCATGCTAGT CTGTGGGTCT CTCTGTGTGT TCTTGTGTGT
  GTGTGTATGT GTGTGTTCTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359403782	MGP_WTSI_3_118134471	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	G	A	A	A	A	A	G	G	A	A	A	A	A	G	A	G	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs245522019					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	G	A	A	A	A	A	G	G	A	A	A	A	A	G	A	G	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359403782	MGP_WTSI_3_118134471	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:118225202 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13749	CpG island 13749	953 bp distal
Cpgi13750	CpG island 13750	1919 bp proximal
Gm26871	predicted gene, 26871	within coordinates
Rr375642	regulatory region 375642	1492 bp upstream
Rr583893	regulatory region 583893	1141 bp distal
Rr583894	regulatory region 583894	1160 bp distal
Rr583895	regulatory region 583895	74 bp distal
Rr583896	regulatory region 583896	within coordinates
Rr583897	regulatory region 583897	1301 bp proximal
Tssr31405	transcription start site region 31405	1479 bp downstream
Tssr31406	transcription start site region 31406	1185 bp downstream
Tssr31407	transcription start site region 31407	1076 bp downstream
Tssr31408	transcription start site region 31408	88 bp downstream
Tssr31409	transcription start site region 31409	34 bp downstream
Tssr31410	transcription start site region 31410	15 bp downstream