rs245521917 SNP Detail

Summary

• ID
  rs245521917
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:152122850 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTCACAAC TTGTCACCAG
  AGGTCTGTGT CTCACCTGCA GACAGTCAGC ATGGAGGGAG AACAGGCCTG CCAGGAGGAA
  GTCCCCAGGG AGGCTGAAAC CTGGAGAGGA TTCTGTCCTT TGGCAGCTGA AAGCCCAGCA
  GTAAGCAACG GCCAGCTGCA GGCTGAGCAG CAGGTGAGCT GCCCAGAAAA GCATGCTGGC
  M
  AGACGTCCCT CTGTCCAGCA TGGCTGAGCA CACCCCTGAC AGGGAATGGC AGCTGCCCAG
  ACGCTTCATA ACTGCATGCC CCTGAAAGGG GTGGGACTGG AGCCCAGTTG TGGGAAGGCT
  GTTGGCCTTC CGGGCTGTGG TCTCTCTCAG GAACTGGGCA GGGCCAGGAC GTGGATGGAA
  ACCAGGTGGA TTCCTGAGAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363703543	MGP_WTSI_4_151412502	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs245521917					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363703543	MGP_WTSI_4_151412502	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:152122850 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15385	CpG island 15385	730 bp proximal
Nol9	nucleolar protein 9	928 bp upstream
Rr605720	regulatory region 605720	1961 bp distal
Rr605721	regulatory region 605721	1683 bp distal
Rr605722	regulatory region 605722	570 bp distal
Rr605723	regulatory region 605723	165 bp proximal
Rr605724	regulatory region 605724	862 bp proximal
Tas1r1	taste receptor, type 1, member 1	mRNA-UTR
Tssr40490	transcription start site region 40490	922 bp upstream
Tssr40491	transcription start site region 40491	965 bp upstream
Tssr44804	transcription start site region 44804	41 bp downstream