rs245463918 SNP Detail

Summary

• ID
  rs245463918
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:74795706 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGAGGCAAA ATTGCTGTTG
  TCAGCGTCCC TTTGTGGGTG AAGGCTAACT GCCCTCTGCT GCTAGCCGGT GCAGGCTTCA
  TTTGATAAGG AAATTCACAC TCTTCCAAGG ACTGTTTGCC ATGTAAAATG AGGTTCTTGG
  ATAGGAAAAA AAATTTTCTT ACTGCAAAAA GAAAGATTTC TTCCTGGTAA AATAGTTGGG
  K
  TTTTTTTTTG GGGGGGGGGG AAACGGTGTA GCCCCCCCAT CAAATCACAC ACCAGGATTC
  CCCTTGGAAA GAGGATCGGT TGCCATGGTA ACCAAACCTT CAGCAGTTTC CCTCAAGACA
  GTGGAGACTG GAAGGAAATC AGGAGATGGC GGAAGTCTAC CGAAGAGGCC CCAGGTCCTC
  ACCACACCCA CTGGTTCCTA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	CBA/J	CZECHII/EiJ	DBA/2J	MOLF/EiJ	NZO/HlLtJ	RF/J	SEA/GnJ	SJL/J	SM/J	SWR/J	WSB/EiJ
ss354489724	MGP_WTSI_2_74803419	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	CBA/J	CZECHII/EiJ	DBA/2J	MOLF/EiJ	NZO/HlLtJ	RF/J	SEA/GnJ	SJL/J	SM/J	SWR/J	WSB/EiJ
rs245463918					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss354489724	MGP_WTSI_2_74803419	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:74795706 () rs orientation: forward

Symbol	Name	Function Class
Gm75057	predicted gene, 75057	94 bp upstream
Igs15	intergenic site 15	within coordinates
Rr559413	regulatory region 559413	551 bp distal
Rr559414	regulatory region 559414	807 bp distal
Rr559415	regulatory region 559415	within coordinates
Rr559416	regulatory region 559416	113 bp proximal