rs245462127 SNP Detail

Summary

• ID
  rs245462127
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:79792347 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGCTTCCC AAGGCTGCCA
  TTTCTGTGTC GCTTAGCAAA TGAGACACTA GGGGGCTCCC AGGGGCTGAA AGGAGCAGAA
  AGTTGTTTGA ATGAAAACTG GGTCTGAGCT GTGTTTGGAG AAATTCAAAA TTAAATTTTA
  TTTTTTATTT TTTTAGTCAT CTTTAAAAAG AACCTCACGT GTCTGAAAAC GGCGCAGCAG
  Y
  CAGTTTACAA ATCATTTTGC TCCGCTGTTA GAAGGCGGCA GCTTTTAAGG CTGAGCCGAG
  ATGTTTGAAA GGTGGAACAC CCTTGGCCAT GAAATATGTT CTCCTTACGT GCCTCAGCCT
  TTCAAAGTTC TGTGCATTAG AGTCAGGAAT TCCATTCTTC CTGGAGCTAA GCGTGGGGCC
  AGCTGTGTAA GTAAAGTTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358593247	MGP_WTSI_3_79688962	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs245462127					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358593247	MGP_WTSI_3_79688962	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:79792347 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13279	CpG island 13279			1017 bp proximal
Gask1b	golgi associated kinase 1B			Intron
				mRNA-UTR
Gm36569	predicted gene, 36569			within coordinates
Rr375225	regulatory region 375225			1508 bp downstream
Rr375226	regulatory region 375226			435 bp upstream
Rr578602	regulatory region 578602			1559 bp distal
Rr578603	regulatory region 578603			1766 bp distal
Rr578604	regulatory region 578604			1482 bp distal
Rr578605	regulatory region 578605			within coordinates
Rr578606	regulatory region 578606			794 bp proximal
Rr578607	regulatory region 578607			1314 bp proximal
Rr578608	regulatory region 578608			1763 bp proximal
Rr578609	regulatory region 578609			1812 bp proximal
Rr578610	regulatory region 578610			1852 bp proximal
Tssr29596	transcription start site region 29596			469 bp downstream
Tssr29597	transcription start site region 29597			448 bp downstream
Tssr29598	transcription start site region 29598			within coordinates
Tssr29599	transcription start site region 29599			66 bp upstream
Tssr29600	transcription start site region 29600			112 bp upstream
Tssr29601	transcription start site region 29601			143 bp upstream
Tssr29602	transcription start site region 29602			909 bp upstream
Tssr29603	transcription start site region 29603			1000 bp upstream
Tssr29604	transcription start site region 29604			1072 bp upstream
Tssr29605	transcription start site region 29605			1141 bp upstream
Tssr29606	transcription start site region 29606			1174 bp upstream
Tssr29607	transcription start site region 29607			1844 bp upstream
Tssr29608	transcription start site region 29608			1862 bp upstream
Tssr33752	transcription start site region 33752			1123 bp downstream
Tssr33753	transcription start site region 33753			1141 bp downstream
Tssr33754	transcription start site region 33754			1756 bp downstream