rs245421214 SNP Detail

Summary

• ID
  rs245421214
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:108637714 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGAGGCCCC AGAGCTCCGG
  GGTGCCCGCG GCGGCCGCAC TGGCAGGACG CTCCGTCCGC CCGGCCCAAT AGCTGGCGCC
  AGGACCCCTG GGCGGCGCAA GCAGACGAGC CCCGAACCGC AGCGCGCCAC ACTCACCGCC
  TCTCCATGGC CCGGGGGTCG TCACTCAGCC GAGAGCCTCG TCCTCAGCGG GGCTCCGCCG
  Y
  GAAGCCTCGC ACTCCTGAGG GGGCTGCGGT CTCAGCGGCC GGGACTGAGG CCCAGCGCCC
  CTCCAGCCGC CTCAGCCACG CGGGTCCGGG AAAGCGCGGC CGAGCGCGGC CGAGCGCGGC
  CGGGGGCGCA GCTTACGGCG GGACAACCGA GGCGATGCAG GCAGACGGGC TCGGCGAAGC
  CTCGGGCGCC GCCGCGGTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss362788878	MGP_WTSI_4_108453122	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs245421214					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss362788878	MGP_WTSI_4_108453122	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:108637714 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
3110021N24Rik	RIKEN cDNA 3110021N24 gene			within coordinates
Gm69047	predicted gene, 69047			418 bp upstream
Rr597214	regulatory region 597214			25 bp distal
Rr597215	regulatory region 597215			within coordinates
Rr597216	regulatory region 597216			429 bp proximal
Rr597217	regulatory region 597217			1148 bp proximal
Rr597218	regulatory region 597218			1837 bp proximal
Tssr42735	transcription start site region 42735			123 bp downstream
Tssr42736	transcription start site region 42736			265 bp downstream
Tssr42737	transcription start site region 42737			294 bp downstream
Zfyve9	zinc finger, FYVE domain containing 9			Intron
				mRNA-UTR