rs245410407 SNP Detail

Summary

• ID
  rs245410407
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:119307351 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCAC CCCACCTCAG CAACTGCCCT
  R
  GGAAGAAAGC CCTGATCATC GTGCA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321927684	CHEV_6_119280408	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs245410407					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:119307351 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cacna2d4	calcium channel, voltage-dependent, alpha 2/delta subunit 4			Intron
				Noncoding-Transcript-Variant
Cpgi17908	CpG island 17908			within coordinates
Lrtm2	leucine-rich repeats and transmembrane domains 2			Intron
				Noncoding-Transcript-Variant
Rr637632	regulatory region 637632			1197 bp distal
Rr637633	regulatory region 637633			696 bp distal
Rr637634	regulatory region 637634			1100 bp distal
Rr637635	regulatory region 637635			357 bp proximal
Rr637636	regulatory region 637636			1710 bp proximal
Tssr62703	transcription start site region 62703			178 bp downstream
Tssr62704	transcription start site region 62704			203 bp downstream
Tssr62705	transcription start site region 62705			278 bp downstream
Tssr62706	transcription start site region 62706			310 bp downstream
Tssr62707	transcription start site region 62707			333 bp downstream
Tssr62708	transcription start site region 62708			416 bp downstream