rs245403114 SNP Detail

Summary

• ID
  rs245403114
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:139974749 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAACGTCGTC CTTAGGGGCT
  TCAGAGCTTC AGTGTTCCAC AAATAAGGGC TACCCTCCAG CCCGCGCCCC GCGCAGAACA
  GCTGCATTGT ATGTGCAGGC TGGACCGGGC AAGGGAGGCA TCGACTTTTT CTTCTGAGAC
  CAAGATGTCA CCTTAAAAAA AAAATCAGGG CTGACACCCC AGCTCCTCCA CCTGAGAACC
  R
  GGGTGGGGTT GAAACTTGTG TCAGATCGTC GCTTTGATCG CTCACGCACT ATTGAGCCTG
  GGCTGTGGGG TCTCCCACGT GAGGAAGAGG CAGGTGCTCC TAGCTCTTAG GGTGGTGGTG
  GGGGTGGTGG AACCAGGAGT TAGATCGTCA AGTTCCAGAA TGAACAGCAG AACCAGAGAG
  TGACTCTGAG CCCCCAAACC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363487620	MGP_WTSI_4_139803353	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs245403114					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363487620	MGP_WTSI_4_139803353	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:139974749 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15191	CpG island 15191	within coordinates
Gm69798	predicted gene, 69798	within coordinates
Gm69835	predicted gene, 69835	within coordinates
Igsf21	immunoglobulin superfamily, member 21	654 bp upstream
Rr603405	regulatory region 603405	1999 bp distal
Rr603406	regulatory region 603406	164 bp distal
Rr603407	regulatory region 603407	1164 bp proximal
Rr603408	regulatory region 603408	1743 bp proximal
Tssr44245	transcription start site region 44245	645 bp upstream
Tssr44246	transcription start site region 44246	614 bp upstream
Tssr44247	transcription start site region 44247	492 bp upstream