rs245356422 SNP Detail

Summary

• ID
  rs245356422
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:151948662 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATGACCCCT AAGTCCACAG
  ATGTTTTCGT CCTAAAATTT GCACCCCTGT CTTCCTGTGT GAACTTCACA AGAGCAGGGA
  CTTTGCCATC TTGGCAGTTG CCTTCAAGCT GTGACTGATT TAGCCCAGTA TGCTCTGTCA
  GCACCAATGA GCCTTTGGGC AAACTTTCTC CACCCCAGGA AGTGCTTCCA TCCCTCTATT
  K
  TGGTCATTGT TTTAGCTTTT ATGTGCTCAT GATGCTAGGA ATTGCGCTCC CCTGCGTGCG
  TGCGCACGTT CAGCAGGAGC TCCACCATTG CGCTGCCTCC CTAACATTTT ATCCCTTCGT
  TGCTTCTAAT TCCGTAATCA TTCTGTCTTG ATGTCAGCGC CTCCCCTGCC CACCCTATTG
  GGTTTGGCCA TCTGTGACCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NZO/HlLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356144640	MGP_WTSI_2_151932478	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NZO/HlLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs245356422					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356144640	MGP_WTSI_2_151932478	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:151948662 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
9230118N01Rik	RIKEN cDNA 9230118N01 gene			630 bp upstream
Cpgi12438	CpG island 12438			574 bp distal
Rr567287	regulatory region 567287			1297 bp distal
Rr567288	regulatory region 567288			1208 bp distal
Rr567289	regulatory region 567289			1213 bp distal
Rr567290	regulatory region 567290			1061 bp distal
Rr567291	regulatory region 567291			204 bp distal
Srxn1	sulfiredoxin 1 homolog (S. cerevisiae)			Intron
				Noncoding-Transcript-Variant
Tssr20767	transcription start site region 20767			1924 bp downstream
Tssr20768	transcription start site region 20768			1807 bp downstream
Tssr20769	transcription start site region 20769			1003 bp downstream
Tssr20770	transcription start site region 20770			480 bp downstream
Tssr20771	transcription start site region 20771			1271 bp upstream
Tssr26780	transcription start site region 26780			1355 bp upstream
Tssr26781	transcription start site region 26781			686 bp upstream