rs245299854 SNP Detail

Summary

• ID
  rs245299854
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:130006027 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GCAAAAGCT GATTAAGTTA AAGCACCTTA
  GAGAGCCTCA AAACCCTGAA AAATACCAAA TATAGCTTAT TTTGATCAGC TAGGACCTAG
  AGATAATTTT TCTGTGATGC TCCAGAAACC ATGGTTACTG AACTCTTGCC TTTTGCCCTC
  Y
  GCCCCCGGTT TGTTTATGGA TCTGAAATGC TGCTAGAAAG GTCTGCAAAG ACCTGGGAGG
  GGTACACGGA GTCAAAGACC TGCCTCTCGT TTCTGTTTCA GACCTTAACT TGCAATTCAG
  TGACCCCGGG ACCAACCCAG AGccttacac                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321317103	CHEV_4_129789478	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs245299854					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:130006027 () rs orientation: forward

Symbol	Name	Function Class
Gm40258	predicted gene, 40258	237 bp upstream
Pef1	penta-EF hand domain containing 1	Intron
Rr600447	regulatory region 600447	1796 bp distal
Rr600448	regulatory region 600448	102 bp proximal