rs245273867 SNP Detail

Summary

• ID
  rs245273867
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:95289953 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCAGCACTG GTGTCCCCTC
  CTAGGACGCG AGCAGCACCG CCCAACAGCG CTGTGTGCAG CGGGAACCCA GTTCTGAAGC
  CTTGGCCCTG GTGCTAGCCC ATTCCAGCGG GTTTGTGGTT TCTCCCTCAA GGAGGAAGTA
  ATAAATCTTT CTGGGCCCGG GGTCACTGAA GAGGCTTCAG AGTATGCCTC TCCGCAACCT
  Y
  TCCGAGTGTC CTGGATTTGG ACAAGGCCAC AAGGTTTCGA TGATCCCACC CCCACCTCCT
  GCCCGGCAGA TGTTCTAGGC TTGTGGAGTT TCCACCTCTG CTGACACCCT CTGAGACAGG
  GCTGCTGGGG GGAGGGGAGG GCGCTTTGTT TAAATTTGTG GTGTGATAGT GAGTCCATTG
  ACTTTAAAGA GGAAGAGATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323100050	CHEV_9_95308319	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs245273867					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:95289953 () rs orientation: forward

Symbol	Name	Function Class
Chst2	carbohydrate sulfotransferase 2	630 bp upstream
Gm35915	predicted gene, 35915	within coordinates
Gm37805	predicted gene, 37805	within coordinates
Rr684787	regulatory region 684787	1938 bp distal
Rr684788	regulatory region 684788	1915 bp distal
Rr684789	regulatory region 684789	1756 bp distal
Rr684790	regulatory region 684790	535 bp distal
Rr684791	regulatory region 684791	within coordinates
Tssr86547	transcription start site region 86547	461 bp downstream
Tssr90904	transcription start site region 90904	781 bp upstream
Tssr90905	transcription start site region 90905	709 bp upstream
Tssr90906	transcription start site region 90906	688 bp upstream
Tssr90907	transcription start site region 90907	661 bp upstream
Tssr90908	transcription start site region 90908	624 bp upstream
Tssr90909	transcription start site region 90909	601 bp upstream
Tssr90910	transcription start site region 90910	567 bp upstream
Tssr90911	transcription start site region 90911	539 bp upstream
Tssr90912	transcription start site region 90912	121 bp upstream